CoMPLEX Case Presentations 2007-8

UCL CoMPLEX

CENTRE FOR MATHEMATICS AND PHYSICS IN THE
LIFE SCIENCES AND EXPERIMENTAL BIOLOGY.

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Case Presentations are In the library, 3rd floor Wolfson House (WoHo) unless otherwise stated. To get to the library, take the lift to the 3rd floor and turn left - it's the door at the end of the corridor

Case Presentations 2007/8

Supervisors	Title of Presentation	Dates/Venues	'Block'	Location
Janaina Mourao-Miranda, David Hardoon & John Shawe-Taylor	Multivariate analysis of fMRI scans using machine learning techniques	11th Jan 2008, 10-12, 2-4	1	Wolfson House
Sylvia Nagl	Emergence	17th & 18th Jan 2008, 2-4	1	Wolfson House
Buzz Baum & Tom Duke	Cell shape and polarity in cells with and without a cell wall	21st Jan 2008, 2-4	1	Wolfson House
Jodi Lindsey & Rob Seymour	Modelling the evolution of the superbug MRSA (Methicillin Resistant Staphylococcus Aureus)	28th & 29th Jan 2008, 2-4	1	Wolfson House
Daniel Hochhauser & David Bogle	The EGFR pathway in human cancer biology	4th & 5th Feb 2008, 2-4	1	Wolfson House
John O'Keefe & Neil Burgess	The neuronal representation of spatial location	19th & 20th Feb 2008, 2-4, 11-1	2	Wolfson House Pharm Seminar Room
Paul Kellam & Peter Coveney	Multi-level control of gene expression and modelling of transcription factors	25th Feb, 11-1, 2-4	2	Wolfson House
Chris Reid & Sofia Olhede	Evidence from the continous plankton recorder survey for climate impacts on North Atlantic ecosystems	26th Feb, 11-1, 2-4	2	Pharm Seminar Room
Mark Lythgoe & Quinten Pankhurst	Magnetic targeting and imaging of nanoparticle labeled stem cells for celluar therapy	3rd March, 10.30-12.30, 2-4	2	Wolfson House
Sally Day & Guy Moss	Following the control of peptide release in cells and networks using structured illumination	4th March, 9-11, 11.30-1.30	2	Pharm Seminar Room

Case Presentations 2006/2007.

Supervisors	Title of Presentation	Dates/Venues	'Block'	Location
David McAlpine		27th October 2006, 3-5pm both	1	Foster Court, Room 111
David McAlpine		3rd November 2006, 3-5pm	1	Foster Court, Room 111
Alan Johnston & Peter McOwan	Computational Vision: Second-Order Motion	10th November 2006, 3-5 pm	1	Wolfson House
Alan Johnston & Peter McOwan	Computational Vision: Second-Order Motion Part 2	17th November 2006, 3-5pm	1	Wolfson House
Joseph Kittler	Multi particle tracking of fluorescent signals to image cellular compartments and receptor transport mechanisms	27th November 2-4pm	1	Wolfson House
Lewis Griffin	Multi particle tracking of fluorescent signals to image cellular compartments and receptor transport mechanisms	28th November 2-4pm	1	Pharmacology Seminar Room G40
Buzz Baum & Mark Miodownik	Life in the Material World	1st December 2006, 2-4pm	1	Wolfson House
Buzz Baum & Mark Miodownik	Life in the Material World	4th December 2006, 2-4pm	1	Pharmacology Seminar Room G40
F. Baganz & A. Batagov	Metabolomics applied to Systems Biology	8th & 9th Jan 07	2	WoHo lib 2-4
P. Coveney & M. Davies	Introduction to immunology, immunoinformatics, and computational vaccinology.	16th Jan 07	2	Seminar room WoHo, 10.30-2.30
S. Yamaji & J. Hetherington	Vertical integration of biological scales: towards in silico organs for computational physiology	22nd & 23rd Jan 07	2	2-4 WoHo lib both dates
Neil Kitchen & F. Smith	On brain haemodynamics and stroke	29th & 30th Jan 07	2	29th - WoHo lib 2-4 30th - postponed, will be rearranged.
M. Thomas & S. Shannon	provisional **CANCELLED**	5th & 6th Feb 07	3	cancelled
J. Mallet & Z. Yang	Bayesian analysis in population genetics	12th & 13th Feb 07	3	12th - WoHo lib 10-12 13th - seminar room WoHo 10-12
G. Hurst & Max Reuter	The dynamics of interactions between inherited bacteria and their hosts	19th & 20th Feb 07	3	2-4 WoHo lib both dates
David Bogle, Dr Shanthi Muttukrishna, Richard Allen and Eric Jauniaux.	TBA	23rd Feb 07	3	10-12 WoHo lib and 2-4 seminar room WoHo
R. Abadi & R. Clement	Modelling visual completion and visual hallucinations	26th & 27th Feb 07	3	2-4 26th - WoHo lib 27th seminar room

ITPL/SPL lectures 2007

DAY, DATE, TIME	TITLE	LOCATION	LECTURER
3rd October 3-5pm	Fast track biology for Nanotechnologists	Pharmacology Seminar Room G40	GM
4th October 2-5pm	Overview of scanning probe microscopy & AFM I (basic introduction)	Pharmacology Seminar Room G40	AF & BH
11th October 2-4pm	AFMII (application to living cells) and AFM III (cantilevers)	AV Hill LT	RM & GC
18th October 2-5pm	SNOM	AV Hill LT	FC
25th October 2-5pm	SICM I (basic introduction) and SICM II (applications)	AV Hill LT	GM
2nd November 2-4pm	Introduction to Optical Techniques	WoHo library	JM
5th November 2-4pm (SPL)	Optical Probe Techniques	Pharmacology Seminar Room G40	AJB
6th November 2-4pm	Optical Probe Techniques	Pharmacology Seminar Room G40	AJB
8th November 2-4pm (SPL)	Optical Probe Techniques	AV Hill LT	AJB
12th November 2-4pm (SPL)	Optical Monitoring	Room 119 Malet Place Engineering Building	CE
14th November 2-4pm	Optical Monitoring II	Room 119 Malet Place Engineering Building	LE
15th November 10-12	Microfluidics	Pharmacology Seminar Room G40	NS
week commencing 19th Nov. TBC	Practical week - to be confirmed

Staff abbreviations: GM Guy Moss; PO Paul O'Shea; AJB Angus Bain; CE Clare Elwell; AF Andrew Fisher; NS Nicholas Szita; RM Rachel McKendry; GC Guilluame Charras; FC Franco Cacialli; AN Arokia Nathan; JM Justin Molloy; DD Dave Delpy; NM Nicholas Szita; BH Bart Hoogenboom; LE Louise Enfield.

ITPL/SPL lectures 2006

DAY, DATE, TIME	TITLE	LOCATION	LECTURER
Wednesday 4th October 3-5pm	Fast track biology for Nanotechnologists	Pharmacology Seminar Room G40	GM
Thursday 5th October 2-5pm	Introduction to Optical and Scanning Probe Techniques	Pharmacology Seminar Room G40	PO
Thursday 12th October 2-4pm	Optical Probe Techniques (lectures 1 & 2)	AV Hill LT	AJB & PO
Thursday 19th October 2-5pm	Optical Probe Techniques (lectures 3,4 & 5)	Pharmacology Seminar Room G40	AJB & PO
Thursday 26th October 2-5pm	Optical Probe Techniques (lectures 6,7 & 8)	Pharmacology Seminar Room G40	AJB & PO
Thursday 2nd November 2-4pm	Optical Monitoring	Room 1.19 Eng Bldg Malet Place	CE
Monday 6th November 2-4pm (SPL)	Overview of scanning probe microscopy & AFM1 (AF, 2-3), (AP, 3-4)	Pharmacology Seminar Room G40	AF & AP
Tuesday 7th November	Now on 16th Nov, 10-12
Thursday 9th November 2-4pm (SPL)	AFM II (Cantilevers) and SPM (LB, 2-3), (CR, 3-4)	Pharmacology Seminar Room G40	LB & CR
Monday 13th November 2-4pm (SPL)	AFM III (applications of AFM with Fluorescence) and SNOM. (LB, 2-3), (FC, 3-4)	JZ Young LT	LB & FC
Wednesday 15th November 2-4pm	SICM I & II (with applications).	H.O. Schild Lecture Theatre, Pharmacology	GM
Thursday 16th November 10-12	Optical Imaging	Pharmacology Seminar Room G40	DD
week commencing 20th Nov. TBC	Practical week - to be confirmed

GM = Guy Moss, PO = Paul O'Shea, AJB = Angus Bain, CE = C. Elwell ,DD = Dave Delpy, AF = Andrew Fisher, CR = Cristophe Renner, AP = Andrew Pelling, FC = Frank Cacialli, LB = Laurent Bozec.

Case Presentations 2005/2006.

Supervisors	Title of Presentation	Dates	'Block'
Brian Henderson Rob Seymour	Network interactions between bacteria and host immune systems controlling inflammation	28th Nov 05 10-12 28th Nov 05 2-4	1
Greg Hurst Rob Knell (QMC)	Epidemiology, ecology and evolutionary biology of reproductive parasites	5th Dec 05, 2-4 6th Dec 05, 2.15-4.15.	1
A. Pomiankowski Johnny Kelsey **venue	Network evolution and structure	12th Dec, 2-4 13th Dec, 2-4	1
Anne Ridley David Bogle	Modelling endothelial shape change induced by fluid flow.	19th Dec, 2-4pm 20th Dec, 2.15-4.15pm	1
Buzz Baum, Simon Prince, Mark Miodownik.	Functional genomic analysis of cell shape. In silico models to study the evolution of robust animal development	12th January 2006 . 10-12 and 2-4.	2
Guy Moss, Angus Bain.	Creating optical nanosensors for biological problems	19th January. 2-5. (single session). Pharmacology Seminar Room (G40)	2
John O'Keefe.	Hippocampus, spatial maps, episodic memory	24th January. 2-5. (single session).	2
Frank Baganz, Arsen Batagov, Yuhong Zhou.	Functional genomics, FANCY concept, HT cell cultivation, metabalome analysis. (FB/AB). MCA, co-response analysis and extensions, deconvolutions of complex data sets (e.g. MS spectra). (YZ,AB).	31st January. 2-4. Pharmacology Seminar Room (G40) 2nd Feb. 2-4. Pharmacology Seminar Room (G40)	2
Marta Varela Rey James Hetherington	From hepatocyte to liver, the role of gap-junctions in the liver cell plate heterogeneity.	6th Feb. 2-4 7th Feb. 2-4	3
Peter Coveney Darren Flower	Multi-scale Modelling of the Immune System	16th Feb. 11.0-12.30, library, WoHo. 2-4, library WoHo.	3
Jim Mallet Ziheng Yang	MCMC algorithms in genetics	20th Feb. 2-4 21st Feb. 2-4	3
Richard Clement Ozgur Akman	Dynamics of an oculomotor disorder	27th Feb. 2-4 28th Feb. 2-4 venue for 28th: Haldane Lecture Theatre*	3

*Haldane Lecture Theatre - basement Wolfson House.

**Both take place in the Pharmacology Seminar Room - which is housed in the Medical Sciences Building in: room G40 - up the stairs over the archway (this makes sense when you get there) and turn right as you enter the building.

Case presentations 2004

Venue for all Case Presentations is room 202, unless marked with an asterisk*, when they will be in the library - 3rd floor Wolfson House.

This timetable is left here for reference

Supervisors	Title of Presentation	Dates	'Block'
David Bogle Mike Hubank	Gene Networks and Viral Hackers: analysis of the p53 Protein Interaction Network	Wed 1st December 04, 2-4pm Thurs 2nd December 04, 2-4pm	1
Guy Moss Andrew Shevchuk	Using scanning ion conductance microscopy to study neurons.	Tues 7th Dec. 04, 2-4pm Wed 8th Dec. 04, 2-4pm	3
Andrew Pomiankowski Tom MacCarthy	Gene Network Evolution	Mon 13th Dec 2-4pm (AP) Tues 14th Dec 2-4pm (TM)	1
Rob Seymour Brian Henderson	Network Interactions between bacteria and host immune systems controlling inflammation	Thursday 13th Jan* 2-4pm Friday 14th Jan* 2-4pm	1
Karen Page John Dearling	Mathematical Modelling of tumour	Tuesday 18th Jan, 2-4pm* Wednesday 19th Jan, 3-5pm	2
Alan Johnston Peter McOwan	Computational Vision: Second-order motion.	Thurs 27th Jan, 2-4 (AJ) Fri 28th Jan*, 2-4 (P MCO)	3
Frank Smith Chris Fry	Bladder and Urethra	Tues 1st Feb, 2-4 (CS) Wed 2nd Feb, 2-4 (FS)	2
Steve Baigent Murad Banaji	Modelling of Cerebral Autoregulation	2.30-4.30 Mon, Tue and Wed (7th, 8th and 9th Feb.)	2
Angus Bain TBA		Thursday 17th Feb 2pm-5pm	3
Greg Hurst Max Telford	Pathogens and their hosts; ecology and evolution	Monday Feb 21st*, 2-4pm Tuesday Feb 22nd, 2-4pm	1
Anthony Finkelstein Anne Warner	Computational Challenges of Systems Biology	Thursday 3rd* March, 2-4pm. Friday 4th* March, 2-4pm	2
Frank Baganz Yuhong Zhou	Metabolic engineering: A powerful tool for strain improvement	Tues 8th March (FB), 2-4pm Wed 9th* March (YZ), 2-4pm	3

If marked with * venue = library (3rd floor), otherwise 202 (2nd floor).

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